Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015896281.1_cds_XP_016447850.1_42566
CDS Infomation

[gene=LOC107772905] [db_xref=GeneID:107772905] [protein=RNA polymerase I-specific transcription initiation factor RRN3-like] [protein_id=XP_016447850.1] [location=complement(join(10181..10472,10624..10805,12454..12570,13139..13226,13359..13442,14378..14481,14657..14725,14804..14920,16165..16278,16368..16478,16683..16928,17008..17079,17174..17245,17343..17426,18789..18902))] [gbkey=CDS]
Sequence

ATGGGAATGGTATTACCAGCTGAGCAGGCAGGCTATGCTGAGATGGAGAATGTTGAGATT
ACGGATACAGAGTTGTTCTATCATGTTAGAGGTGCCCTTAAATCCGCTCTCGAGGGTGAT
CCGGACAAATATAACCAGCTTGTTGGGGTTATGCACTGTAAGGAACGCCTTGTACCTGAA
GAGGTGGCCCTACTAGTGACATGTTTAAAAGCTTTGTCAGGATCAGTTTCTTGTCTAGAC
ATTGTTCACCATCAAAGTCTTCTTTCATCTATTTTAGGAATGAGCATGTGGAACTATGGG
ACTGATGTAATGGATGCTTTGATGGAATTACTTATATCCTTGGCTACATCTGGTGGGCAG
TATGTCGATTTGTGCTTGGAAATGCTTGTGAACAATTTTGTGCCTCCTCCTTCATTCATA
TCATTGTTGAATCAGCCACGTGGCATTTTACGAAAGGGCCAAGTCACTGATCGTGTCCAT
TCAACTTTAATAGACATTGCAGAGTTAGTTCCTCTCTCCCCCTTGAGACTTGAGAAGATA
GTAAAGGAGAAGATGCAGAAGATGCCAATCAATTACACAAAGGAACCATTCATCATGACA
TATGTGGAGAACATGTTAAAACTGGAGGGTGGAGCAATTGGTGGTCTTGTTGGGAGAACA
ATGCTTGTGGCAATTATGGATTGGCTGATAGATCTGGATGTAGACATTGCATGGGATGAA
ATCTTAAATGAGGATTTCACCAAATGCATCTTCGATATGGAGCTGGAAGATCTGGATGGT
CCTGTAGATGATGGTCAGCAAGATGGTGACCAGCTCCGAATTTCTTGGATGGAACGGCTT
GGAAATGCCAGTGCTCAAAAATTGGATAGCTTGATGGTGCTTACCTTTGAACACCTTAAC
TTTTGCAAAGAGAGTGGACGCCTGAGTCAGGTTTTTGAGACTCTTCTCCAGTCTTTTCAG
CATACTGTTTTGACGGCATACAAGTCTAAATTTGCCCAGTTTGTGATGTTTTATGCCTGT
ACCCTGGATCCTGAAAACTGCGGCAGGAGATTTGCTGATACACTATTTGATATATTTAAG
AGCAGTATCTATCCACAATGGAGAATGAGTGCTGTTGCCTATCTTGCTAGTTATTTGGCT
CGTGCAAAGTTTTTCTCTATCTCATCTGTTGCTGAATATGTAGAAAGTTTGGTTGAATGG
TGTTCCACTTATTGCTCCAACCAGAGTGGTGGCATCAATCCAAAAGCTCACAAGGAATTC
TATGCTGGGTGCCAGGCCATGATGTACATACTTTGTTTTCGCATGAGATCAATGCTTGCT
ATTCCTCGTATCAGGTCGCGGCTCTCAAAGCACATAGAGGATATCCTAAGGCATCCATTG
AGCCCATTAATGGTATGCTTGCCATCAGTAGTGAAAGAATTTCTTCGGTTGGCAAAAGTA
ACTAATCTTGATGTGCCTGACAACTTTGTATCAAGTGGTCTGCTCGAATCCGATCTTTCA
ATCTCTTTTGGTGGTAGAGAGAGGCTTGACATGTTTTTCCCATTTGATCCTTGTCTGCTA
TTGAGATCTGACAGATTCATCCGGCCAAATTTTGTGTACTGGTCAATGGTTCGGAGCTCA
TATGACAACGACGATGATGATGATGAGGGTACTAGTGATGAAGACGATATTGAAATCTGT
ACTGCAGGGAAGGGGATGAATATAGCCGATGGAGTCGCCCGAAGTTATGATCAGGATCTT
GATGAATTTGATAATGAAATGAGCAAAATGTCCATAACACCTAAAGTTGCTCAATGGTTT
GGAGGTGAATTACAACCTGAGATGCAGATGCCTTCAAGAATCAGACCTTGTCCCGAGTCC
TTGTAG

Peptide Sequence

PEP ID

XP_016447850.1
PEP Infomation

PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3-like [Nicotiana tabacum]
Sequence

MGMVLPAEQAGYAEMENVEITDTELFYHVRGALKSALEGDPDKYNQLVGVMHCKERLVPE
EVALLVTCLKALSGSVSCLDIVHHQSLLSSILGMSMWNYGTDVMDALMELLISLATSGGQ
YVDLCLEMLVNNFVPPPSFISLLNQPRGILRKGQVTDRVHSTLIDIAELVPLSPLRLEKI
VKEKMQKMPINYTKEPFIMTYVENMLKLEGGAIGGLVGRTMLVAIMDWLIDLDVDIAWDE
ILNEDFTKCIFDMELEDLDGPVDDGQQDGDQLRISWMERLGNASAQKLDSLMVLTFEHLN
FCKESGRLSQVFETLLQSFQHTVLTAYKSKFAQFVMFYACTLDPENCGRRFADTLFDIFK
SSIYPQWRMSAVAYLASYLARAKFFSISSVAEYVESLVEWCSTYCSNQSGGINPKAHKEF
YAGCQAMMYILCFRMRSMLAIPRIRSRLSKHIEDILRHPLSPLMVCLPSVVKEFLRLAKV
TNLDVPDNFVSSGLLESDLSISFGGRERLDMFFPFDPCLLLRSDRFIRPNFVYWSMVRSS
YDNDDDDDEGTSDEDDIEICTAGKGMNIADGVARSYDQDLDEFDNEMSKMSITPKVAQWF
GGELQPEMQMPSRIRPCPESL

Transcript Sequence

Gene sequence data has not been registered.